Curate 2 regolith plant-microbe community records (000310-000311)#233
Merged
Conversation
Continues space-regolith curation with the genuinely multi-microbe, interaction-bearing candidates from the scout report: - 000310 Moss-Microbe Complex Regolith Biofertilizer (doi:10.1016/j.ecolind.2025.114023): Hypnum plumaeforme moss + isolated PGP bacteria Pseudomonas monteilii and Bacillus cereus (+ Devosia by 16S) as a biofertilizer on lunar (LHS)/Martian (MGS) simulants; moss facilitates microbial colonization (COLONIZATION_FACILITATION) and the co-treatment enhances barley growth (MUTUALISM). - 000311 Legume-Rhizobia Mars Simulant Symbiosis (PMID:34879082): Medicago truncatula + Sinorhizobium meliloti/medicae N-fixing symbiosis on Mojave Mars Simulant grades (MMS-1/MMS-2); nodulation (GO:0009877) + nitrogen fixation (GO:0009399, nifH expression) shown functional. Reclassified/absent taxa grounded conservatively (Hypnum at genus level). The moss paper is non-OA with no CrossRef abstract, so its real abstract (via OpenAlex) is appended to the validator's DOI cache for snippet validation, mirroring the OA full-text cache pattern. Validates: linkml-validate, id-label, validate-references; 249 tests pass. Regolith progress: 9/16 scouted candidates curated. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
realmarcin
added a commit
that referenced
this pull request
Jul 21, 2026
The regolith records curated in #232/#233 (Mars meteorite growth panel, Mars-regolith cyanobacteria biofertilizer panel, moss-microbe complex biofertilizer, legume-rhizobia Mars-simulant symbiosis) had no rendered HTML pages. Generate them and add them to the faceted browser + landing index (count 300 -> 304). Their modeled_environment -> ENVO:01000747 "regolith" block renders as intended (finishes NEXT_TASKS §2's modeled_environment page-regen item for the records added since #221). Pure whitespace-only re-render drift on the other 300 pages is left out to keep the diff focused. Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Continues space-regolith curation with the two remaining candidates that are
genuinely multi-microbe, interaction-bearing communities (scout report #8, #12).
New records
(doi:10.1016/j.ecolind.2025.114023): the moss Hypnum plumaeforme + PGP
bacteria Pseudomonas monteilii and Bacillus cereus isolated from it
(+ Devosia by 16S) as a biofertilizer on lunar (LHS) / Martian (MGS)
simulants. Two grounded interactions: moss facilitates microbial
colonization (COLONIZATION_FACILITATION) on the dense MGS simulant, and the
moss-microbe co-treatment enhances barley growth (MUTUALISM).
Medicago truncatula + Sinorhizobium meliloti / S. medicae N-fixing
symbiosis on Mojave Mars Simulant grades (MMS-1 Coarse/Fine/Unsorted/Superfine,
MMS-2). Grounded MUTUALISM with nodulation (GO:0009877) + nitrogen
fixation (GO:0009399; nifH expression detected in nodules).
Curation notes
species level → grounded genus-level (Hypnum) with a note. PGPB
functional_roleomitted (no PGPB-appropriate
FunctionalRoleEnumvalue; SYNTROPHIC_PARTNER wouldmisrepresent them).
validator's fetch yields metadata only. Its real abstract (via OpenAlex) is
appended to the committed DOI cache (
DOI_10.1016_j.ecolind.2025.114023.md) forsnippet validation — same reproducibility pattern as the OA full-text caches.
Validates locally:
linkml-validate, id-label (--labels),just validate-references; 249 tests pass. Regolith progress: 9/16 scoutedcandidates curated.
🤖 Generated with Claude Code