Make streamlit an optional dependency - #8
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Move streamlit and pandas out of the core dependencies into a new `app` extra so that CLI and Python API users get a lightweight install. Bump python-libsbml to >=5.21.1 and sbmlutils to >=0.10.2 (sbmlutils 0.10 moved its heavy dependencies to extras). Remove the unused `packaging` dependency. Document the extras in the README. Closes #7 Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01Ar3vD2HU6SWKcZoavQL6pz
Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01Ar3vD2HU6SWKcZoavQL6pz
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Closes #7
Changes
pyproject.toml: movestreamlitandpandasfromdependenciesinto a newappextra. Core install (CLI + Python API) now only needspython-libsbml,openpyxl,click,python-dateutil,sbmlutils.python-libsbml>=5.21.1andsbmlutils>=0.10.2. sbmlutils 0.10 movedlibroadrunner,matplotlib,py4cytoscapeandcobrato extras, so the transitive install is much lighter. sbmlutils 0.10.2 itself requires libsbml 5.21.1 and pandas 2.2, so the floors are aligned.packagingfrom dependencies (not imported anywhere).README.md: document theapp,apiandtestextras and showpip install -e ".[app]"beforestreamlit run app.py.requirements.txt: same version bumps; still lists streamlit/pandas since Streamlit Cloud reads this file.Verification
pytest test/test_annotations.pypasses,to-sbml/to-tableround trip ontest/Palma2021*works. Without sbmlutils the CLI reports "annotation validation skipped" as before..[app,test](python-libsbml 5.21.1, sbmlutils 0.10.2, pandas 3.0.5, streamlit 1.63): tests pass,mypyclean,sbmlutils.metadata.validator.validate_sbml_annotationssignature unchanged.🤖 Generated with Claude Code
https://claude.ai/code/session_01Ar3vD2HU6SWKcZoavQL6pz