Skip to content

Plotting lineage tree #320

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Draft
yfukai wants to merge 2 commits into
base: main
Choose a base branch
from
Draft

Plotting lineage tree #320

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
bc1dea0
feat(functional): add plot_lineage_tree for matplotlib lineage trees
yfukai Jul 24, 2026
78930a8
feat(functional): callable color/size/marker/text aesthetics in plot_…
yfukai Jul 24, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 2 additions & 0 deletions pyproject.toml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -62,9 +62,11 @@ dependencies = [
[project.optional-dependencies]
spatial = ["spatial-graph"]
motile = ["motile"]
plot = ["matplotlib"]
test = [
"spatial-graph",
"motile",
"matplotlib",
"pytest>=7.0",
"pytest-cov",
"pytest-html",
Expand Down
2 changes: 2 additions & 0 deletions src/tracksdata/functional/__init__.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -6,12 +6,14 @@
from tracksdata.functional._labeling import ancestral_connected_edges
from tracksdata.functional._motile import to_motile_graph
from tracksdata.functional._napari import rx_digraph_to_napari_dict, to_napari_format
from tracksdata.functional._plot import plot_lineage_tree

__all__ = [
"TilingScheme",
"ancestral_connected_edges",
"apply_tiled",
"join_node_attrs_to_edges",
"plot_lineage_tree",
"rx_digraph_to_napari_dict",
"shift_division",
"to_motile_graph",
Expand Down
Loading
Loading