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Pull requests: loculus-project/loculus

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Pull requests list

feat(prepro): basic validation of raw read submissions preprocessing Issues related to the preprocessing component
#6773 opened Jun 26, 2026 by maverbiest Contributor Loading…
3 tasks
6
Exploration demo for bulk revision with files backend related to the loculus backend component preview Triggers a deployment to argocd website Tasks related to the web application
#6770 opened Jun 25, 2026 by tombch Collaborator • Draft
3 tasks
feat(website): add SeqSet citations section to admin dashboard backend related to the loculus backend component website Tasks related to the web application
#6769 opened Jun 25, 2026 by theosanderson-agent Collaborator • Draft
Bulk file revision: reuse existing files without exposing fileMapping to website users backend related to the loculus backend component preview Triggers a deployment to argocd website Tasks related to the web application
#6767 opened Jun 25, 2026 by anna-parker Contributor • Draft
3 tasks
1
demo exploration: rev files backend related to the loculus backend component preview Triggers a deployment to argocd website Tasks related to the web application
#6764 opened Jun 25, 2026 by theosanderson-agent Collaborator • Draft
chore(deps): bump the minor group across 1 directory with 4 updates dependencies Pull requests that update a dependency file java Pull requests that update Java code
#6754 opened Jun 24, 2026 by dependabot Bot Loading…
1
chore(deps): bump actions/checkout from 6 to 7 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#6748 opened Jun 24, 2026 by dependabot Bot Loading…
1
fix(website): Hide management buttons (data use terms, revise, revoke) on revocation version website Tasks related to the web application
#6739 opened Jun 24, 2026 by tombch Collaborator Loading…
3 tasks
2
fix(backend): batch processed file ownership validation backend related to the loculus backend component bug Something isn't working performance
#6725 opened Jun 22, 2026 by clonder Contributor Loading…
1
@clonder
17
refactor(website): Split fetching of backend and lapis sequence details in findOrganismAndData website Tasks related to the web application
#6724 opened Jun 22, 2026 by tombch Collaborator • Draft
3 tasks
feat(everything): POC claude - Cross organism queries: One SILO approach
#6723 opened Jun 20, 2026 by anna-parker Contributor • Draft
18
Experiment (views, API, etc.) backend related to the loculus backend component deployment Code changes targetting the deployment infrastructure preprocessing Issues related to the preprocessing component website Tasks related to the web application
#6715 opened Jun 18, 2026 by chaoran-chen Member • Draft
2
demo(deployment): swap Keycloak for Authelia + lldap + registration-service (merged with main) backend related to the loculus backend component deployment Code changes targetting the deployment infrastructure deposition related to ENA/INSDC deposition ingest Ingest pipeline preprocessing Issues related to the preprocessing component preview Triggers a deployment to argocd website Tasks related to the web application
#6707 opened Jun 17, 2026 by theosanderson-agent Collaborator • Draft
1
feat!(networking): configurable ingress host address and group networking related config options under common networking key
#6699 opened Jun 17, 2026 by florianzwagemaker Contributor Loading…
9
feat(website): Persist previous file uploads when revising submissions preview Triggers a deployment to argocd website Tasks related to the web application
#6694 opened Jun 16, 2026 by tombch Collaborator Loading…
3 tasks
1
9
chore(deps): bump the minorandpatch group in /ingest with 3 updates conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#6681 opened Jun 16, 2026 by dependabot Bot Loading…
Enable raw reads sharing by default deployment Code changes targetting the deployment infrastructure
#6660 opened Jun 12, 2026 by maverbiest Contributor • Draft
3 tasks
3
Theo query service with Anya edits deployment Code changes targetting the deployment infrastructure website Tasks related to the web application
#6655 opened Jun 10, 2026 by anna-parker Contributor • Draft
3 tasks
Theo query service restored
#6645 opened Jun 10, 2026 by anna-parker Contributor • Draft
3 tasks
WIP: feat(backend, deployment): seed dev SeqSet-citation test data + curated-citation endpoint backend related to the loculus backend component deployment Code changes targetting the deployment infrastructure
#6635 opened Jun 9, 2026 by theosanderson Member • Draft
1
feat!(config, deposition): give submitters options for ENA required fields and validate more metadata fields deployment Code changes targetting the deployment infrastructure deposition related to ENA/INSDC deposition
#6634 opened Jun 9, 2026 by anna-parker Contributor • Draft
2 tasks done
1
1
[Proof of concept] ReVSeq preview Triggers a deployment to argocd
#6632 opened Jun 8, 2026 by chaoran-chen Member • Draft
feat(website): add tab on revise page pointing to per-sequence revise website Tasks related to the web application
#6631 opened Jun 8, 2026 by theosanderson Member Loading…
feat(ingest): refactor how metadata is hashed - now in one place ingest Ingest pipeline
#6610 opened Jun 3, 2026 by anna-parker Contributor • Draft
3 tasks
Preview for testing EV upload - do not merge or remove preview label documentation Improvements or additions to documentation preview Triggers a deployment to argocd
#6585 opened Jun 2, 2026 by anna-parker Contributor Loading…
3 tasks
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