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1. rnaseqc rnaseqc Public

   Fast, efficient RNA-Seq metrics for quality control and process optimization

   C++ 182 23

2. SignatureAnalyzer SignatureAnalyzer Public

   Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.

   Python 84 22

3. deTiN deTiN Public

   DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.

   Jupyter Notebook 53 24

4. MutSig2CV MutSig2CV Public

   MutSig2CV from Lawrence et al. 2014

   MATLAB 34 10

5. dalmatian dalmatian Public

   dalmatian is a collection of high-level companion functions for Firecloud and FISS.

   Python 20 13

6. ABSOLUTE ABSOLUTE Public

   ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38

   R 18 10