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Add rbp-maps v1.1.0 image - #23

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byee4 wants to merge 2 commits into
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rbp-maps-v1.1.0
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byee4 wants to merge 2 commits into
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rbp-maps-v1.1.0

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@byee4

@byee4 byee4 commented Oct 3, 2026

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Summary

  • Adds images/rbp-maps/v1.1.0/Dockerfile. It builds the YeoLab/rbp-maps v1.1.0 release tag with Miniforge and the release's own environment.yml: Python 3.13, samtools, bedtools, bedGraphToBigWig and bedToBigBed.
  • Includes JupyterLab and ipykernel, so the image can serve notebooks through galyleo --sif. The rbpmaps/1.1.0 module's rbpmaps_notebook launcher uses this.
  • Publishes ghcr.io/yeolab/rbp-maps:v1.1.0 and adds a CHANGELOG entry.

Verification

  • Both publish runs on this branch succeeded. The current image is from commit 13f90fa (LABEL version="2").
  • I pulled the image with Singularity on TSCC. It has Python 3.13.15, JupyterLab 4.6.4, and plot_map, plot_tss_map, subset_jxc and bed2bigbed-eclip.
  • The rbpmaps/1.1.0 module runs this image:
    • The four previous-version (a5c9bd9) examples that worked before reproduce their old outputs to floating-point precision (48 files; worst difference 5e-10).
    • notebook_walkthrough.ipynb runs inside the image with no cell errors, and its skipped-exon map matches the original ENCODE maps.
  • A dry run on an identical environment showed that adding JupyterLab only adds packages and changes no versions of the scientific stack.

🤖 Generated with Claude Code

byee4 and others added 2 commits October 3, 2026 05:20
Builds the YeoLab/rbp-maps v1.1.0 release tag with Miniforge and the
release's own environment.yml (Python 3.13, samtools, bedtools,
bedGraphToBigWig, bedToBigBed); publishes ghcr.io/yeolab/rbp-maps:v1.1.0.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Lets the image serve the rbp-maps notebook walkthrough through galyleo --sif.
A dry run on an identical environment shows only additions (no version changes
to the scientific stack).

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
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