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HOMER 5.1, bedtools 2.31.1 and Python 3.12 on PATH without activation, for FASTA-mode motif discovery. The build runs findMotifs.pl on a tiny foreground/background pair and fails if no motifs are written. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
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Summary
images/homer/5.1/: HOMER 5.1, bedtools 2.31.1, and Python 3.12 (bioconda/conda-forge, pinned inenvironment.yml) on a digest-pinned micromamba base. It is for FASTA-mode motif discovery and has no genome packages.PATHwithout activation, so it works under Singularity/Apptainer. The build runsfindMotifs.plon a tiny foreground/background pair and fails if no motifs are written.brianyee/clip_analysis_legacyimage in skipper-clipper-snakemake'shomer_motifsrule, which ports clip_analysis_legacy's region-matched HOMER analysis to Python 3.Verification
ghcr.io/yeolab/homer:5.1.findMotifs.plarguments, reproduced the legacy HOMER 4.11 top CDS motif (AMSATG, p=1e-62).🤖 Generated with Claude Code