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Unreachable default branch in phase()'s forward pass cannot be covered by a unit test

Status: Open.

#207 In TimD1/vcfdist;

· TimD1-bot opened on Aug 5, 2026

parse_args: make -h/-v/-ci informational-only invocations, require a value for every other flag, and remove -n

enhancementNew feature or requestNew feature or request

Status: Open.

#206 In TimD1/vcfdist;

· TimD1-bot opened on Aug 5, 2026

D4: Document the GA4GH export path and record the conformance check

Status: Open.

#198 In TimD1/vcfdist;

· TimD1-bot opened on Aug 5, 2026

D4: Add FP_GT, FP_AL, QUERY_UNK, FRAC_NA, totals, and QC ratios

Status: Open.

#197 In TimD1/vcfdist;

· TimD1-bot opened on Aug 5, 2026

D4: Add --require-phase / --no-require-phase

Status: Open.

#196 In TimD1/vcfdist;

· TimD1-bot opened on Aug 5, 2026

D4: Add --stringency {lm,am,gm,pm}

Status: Open.

#195 In TimD1/vcfdist;

· TimD1-bot opened on Aug 5, 2026

D4: One decision per site, in both the TSVs and summary.vcf

Status: Open.

#194 In TimD1/vcfdist;

· TimD1-bot opened on Aug 5, 2026

D4: Add the match-tier criterion enums and ladder

Status: Open.

#193 In TimD1/vcfdist;

· TimD1-bot opened on Aug 5, 2026

D4: Populate ac_errtype for the truth callset

Status: Open.

#192 In TimD1/vcfdist;

· TimD1-bot opened on Aug 5, 2026

D4: Rename FORMAT/SC to INFO/BS and FORMAT/BS to FORMAT/PBS

Status: Open.

#191 In TimD1/vcfdist;

· TimD1-bot opened on Aug 5, 2026

D3: Retain allele-scope unevaluated variants (oversized, three BED tags)

enhancementNew feature or requestNew feature or request

Status: Open.

#107 In TimD1/vcfdist;

· TimD1-bot opened on Aug 3, 2026

D3: Add sideline container for unevaluated variants, with record-scope reasons

enhancementNew feature or requestNew feature or request

Status: Open.

#106 In TimD1/vcfdist;

· TimD1-bot opened on Aug 3, 2026