Issues

• Detecting fusions in intergenic regions

  OpenGene/GeneFuse#48 · Filter by author salhajh opened on Mar 15, 2026

• Reference genome with chr prefix needed

  OpenGene/GeneFuse#47 · Filter by author vrattina opened on Feb 24, 2026

• The report json file is not a valid json file when the base quality value is " in qual field

  OpenGene/GeneFuse#45 · Filter by author Rong-Zh opened on Feb 20, 2025

• Multiple runs show different results.

  OpenGene/GeneFuse#44 · Filter by author Crispy13 opened on Feb 1, 2024

• Maybe a typo in the source code, abs(left.startGP.position) < abs(left.startGP.position)?

  OpenGene/GeneFuse#43 · Filter by author Crispy13 opened on Jan 21, 2024

• IGH-BCL2 is not detected but bam is supported

  OpenGene/GeneFuse#42 · Filter by author swxzh621 opened on Jun 26, 2023
  2

• different gene set gives different results for same fusion

  OpenGene/GeneFuse#41 · Filter by author mhanbioinfo opened on May 24, 2023

• the data size of raw data effected fusion result

  OpenGene/GeneFuse#40 · Filter by author Tina610 opened on Apr 24, 2023

• JSON output corrupted due to a not escaped double-quotes character

  OpenGene/GeneFuse#39 · Filter by author FrancescaMiccolis opened on Dec 9, 2022
  1

• how to filter fusion result

  OpenGene/GeneFuse#38 · Filter by author summerghw opened on Apr 18, 2022

• GOPC_ENST00000052569.6 location

  OpenGene/GeneFuse#37 · Filter by author iamwjy1 opened on Mar 16, 2022

• tmprss-erg

  OpenGene/GeneFuse#36 · Filter by author IlyIla opened on Mar 3, 2022

• GeneFuse on RNA-seq

  OpenGene/GeneFuse#34 · Filter by author deb0612 opened on Apr 16, 2021

• How to get VAF info from genefuse results?

  OpenGene/GeneFuse#33 · Filter by author ZehangJiang opened on Mar 9, 2021

• std::bad_alloc

  OpenGene/GeneFuse#32 · Filter by author Xiaohuaniu0032 opened on Nov 16, 2020

• Can not get the fusions with the testdata

  OpenGene/GeneFuse#31 · Filter by author kingyang728 opened on Oct 20, 2020
  1

• while running Stuck

  OpenGene/GeneFuse#30 · Filter by author hulai-hulai opened on Aug 21, 2020
  10

• GeneFuse ignores fusions in TCF3

  OpenGene/GeneFuse#27 · Filter by author nvolkovaGEL opened on Jun 22, 2020
  3

• Fusion-making .py script does not take into account gene orientation

  OpenGene/GeneFuse#26 · Filter by author nvolkovaGEL opened on Jun 11, 2020
  8

• make: *** No rule to make target 'install'. Stop.

  OpenGene/GeneFuse#20 · Filter by author jrhaulung opened on Nov 11, 2019
  2

• primary transcripts used in fusion.csv

  OpenGene/GeneFuse#19 · Filter by author zhengxinchang opened on Sep 16, 2019
  1

• How to use GeneFuse to detect fusion for nanopore sequencing fastq?

  OpenGene/GeneFuse#18 · Filter by author pepenglp opened on Jul 18, 2019
  1

• gen_fusion_file.jl

  OpenGene/GeneFuse#17 · Filter by author gerbarinov opened on Mar 5, 2019
  2

• No fusion found using tests data

  OpenGene/GeneFuse#16 · Filter by author chizhenfen opened on Jan 1, 2019
  20

• the gen_fusion_file.jl script does not work because OpenGene can not be installed

  OpenGene/GeneFuse#15 · Filter by author yahiaBioinfo opened on Oct 9, 2018
  4