Author(s). Year of publication. Title of your article. Journal.
DiRenzo, G. V., Che-Castaldo, C., Rugenski, A., Brenes, R., Whiles, M. R., Pringle, C. M., Kilham, S. S, and Lips, K. R. 2016. Disassembly of a tadpole community by a multi-host fungal pathogen with limited evidence of recovery. Ecological Applications.
Data S1
Descriptive title of the data and/or code. Optimizing species detection and sampling schemes
Authors File list (downloads) Description
Author(s)
Corresponding author's name: Graziella V. DiRenzo
Affiliation: University of Maryland
Address Line Department of Biology, College Park, MD 20744, USA.
Email: gdirenzo@umd.edu
Co-author's name: Christian Che-Castaldo
Affiliation: University of Maryland
Address Line 1: Department of Biology, College Park, MD 20744, USA.
Co-author's name: Amanda Rugenski
Affiliation: Arizona State University
Address Line 1: School of Life Sciences, Tempe, AZ, 85281, USA.
Co-author's name: Roberto Brenes
Affiliation: University of Tennessee
Address Line 1: Department of Forestry, Wildlife and Fisheries, Knoxville, TN, 37996, USA.
Co-author's name: Matt R. Whiles
Affiliation: Southern Illinois University
Address Line 1: Department of Zoology and Center for Ecology, Carbondale, IL, 62901
Co-author's name: Catherine M. Pringle
Affiliation: University of Georgia
Address Line 1: Odum School of Ecology, Athens, GA, 30602, USA.
Co-author's name: Susan S. Kilham
Affiliation: Drexel University
Address Line 1: Department of Biodiversity, Earth and Environmental Science, Philadelphia, PA, 19104, USA.
Co-author's name: Karen R. Lips
Affiliation: University of Maryland
Address Line 1: Department of Biology, College Park, MD 20744, USA.
File list
DataS1.R
Description
DataS1.R – Code used to simulate and analyze data to determine the optimal number of surveys and sites when surveying species rich communities.
First part- creates function to simulate the data.
Second part- defines model in BUGS language
Third part- define parameters to monitor and the values to run the functions
Fourth part- create empty matrices to store recovered parameters
Fifth part- loop used to run the set of parameters and store recovered parameters