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NEXT_TASKS: record Pelotomaculum causal curation (#243) + Edison auth resolved #244

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realmarcin merged 1 commit into from
Jul 22, 2026
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NEXT_TASKS: record Pelotomaculum causal curation (#243) + Edison auth resolved #244

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26 changes: 15 additions & 11 deletions NEXT_TASKS.md
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Expand Up @@ -340,17 +340,21 @@ for chemical perturbations). Supporting work: `templates/community_causal_graph_

**Done so far:** `Cellulose_Methane_Quad_Culture_SynCom` (#226; + acetate→CHEBI:30089
in #228), `Dehalococcoides_Desulfovibrio_Lactate_TCE_Syntrophy` (#229),
`ANME_SRB_Marine_Methane_Seep_Consortium` (#230). ~58/304 records now carry
`downstream` causal edges. **Next:** continue on high-value syntrophies; always use
the RECORD's canonical taxon ids (Edison groundings have had errors, e.g. sulfite →
CHEBI:16731 *(E)-cinnamaldehyde* instead of CHEBI:17359).

**Blocked 2026-07-21:** next target `Pelotomaculum_Methanocella_Propionate_RNASeq_Coculture`
(CommunityMech:000190, PMID:30038609) — the Edison causal run failed at
authentication ("Failed to authenticate"; `EDISON_API_KEY` present in `.env` but
rejected — expired/revoked key or an Edison auth outage). Nothing billed; the
dry-run query is audited and correct. Re-run `just research-community-causal
CommunityMech:000190` once the key is refreshed.
`ANME_SRB_Marine_Methane_Seep_Consortium` (#230),
`Pelotomaculum_Methanocella_Propionate_RNASeq_Coculture` (#243; CommunityMech:000190,
syntrophic loop 1→2→3→1 + negative product-inhibition edge from the Edison graph on
PMID:30038609). ~59/304 records now carry `downstream` causal edges. **Next:** continue
on high-value syntrophies; always use the RECORD's canonical taxon ids (Edison
groundings have had errors, e.g. sulfite → CHEBI:16731 *(E)-cinnamaldehyde* instead of
CHEBI:17359).

**Edison auth (resolved 2026-07-21):** the key was refreshed in `.env`
(`EDISON_API_KEY`) and now authenticates (HTTP 200). **Gotcha:** the shell profile
exports a stale `EDISON_PLATFORM_API_KEY` that the runner prefers over `.env`
(`load_dotenv` does not override an already-exported var), and it still 403s — so run
causal jobs with `env -u EDISON_PLATFORM_API_KEY just research-community-causal <id>`
until that profile export is updated/removed, or add the good key to `.env` as
`EDISON_PLATFORM_API_KEY=`.
Comment on lines +356 to +357

## Space-regolith community curation (curatable subset DONE, 9/16)

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