Fix 1.1 release audit findings and complete documentation follow-ups - #286

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jeremymanning wants to merge 178 commits into

fix/1.1-release-review

Commits on Sep 6, 2026

Fix 1.1 release review findings in scoring, caching, fonts, and docs
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569a308
Correct NumPy 2 optional dependency floors and finalize release review report
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b3eafe5
refactor(backtest): hoist the Forecaster/Imputer imports out of the scoring loops

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f116dd7
fix(predict,align): reject repeated metrics, blame t= for holdout=True, attribute the unscored warning, score ragged return_score input

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f1a1e09
test: replace the three spy/fake-object tests added since 1.0 with real observables; export HypertoolsOfflineError

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e47968f
test(examples): scan every example and tutorial for the native-usage defect markers, allowlist the deliberate ax= demos, gate the rebuilt tutorials' output cells

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a59f2e2
fix(plot,io,tools): release-review findings in the 1.1 animation, title, colour, loader and text paths

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ef887ca
fix(manip,align): fit() returns self so sklearn-style chains work

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1be634d
docs: release-review documentation fixes for 1.1.0

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f0e56c9
docs(lsl): fold synthetic_outlet's custom 'Signal definition' section into the summary so numpydoc stops warning

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223d468
fix(plot,predict): panels, series-mode, forecast and hierarchy findings from the 1.1 release review

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384fe99
docs(tutorials): re-execute the eight edited tutorials on the reviewed library; gate and test updates

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00e5a00
docs(tutorials): re-rendered wikipedia_embeddings video from the re-executed notebook

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f775b37
docs(notes): 1.1 release review session log (findings, fixes, verification)

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63aa9cf
fix(windows): POSIX paths in the example scanner; cache replace tolerates Windows' transient access-denied

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9340300
docs(notes): three skill-compounder notes from the 1.1 release review (Windows paths, Windows os.replace, detached verification pipeline)

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d20fdde
docs(notes): end state of the 1.1 release review session

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0e4f57b
fix(plot): a marker+line format string keeps its marker in the legend

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45fe779
docs(notes): feature-tour follow-up (legend marker fix, mixture demo data)

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087e338
fix(plot,reduce): aspect-aware panels=True grid, no second pipeline fit under return_model, quiet third-party reducer warnings

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abe9295
docs(notes): 9.8 panels follow-up

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edc7d28
fix(plot): truth= legend glyph shows its markers; 2-D density grids span the whole scene

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1862086

Commits on Sep 7, 2026

Commits on Sep 8, 2026

Commits on Sep 9, 2026

Commits on Sep 10, 2026

Commits on Sep 11, 2026

fix: make notebook review I/O portable to Windows
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181410a
ci: provision the verified Ruff version for lint checks
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fa3e60e
fix: stream plots under a plotly render backend; scan axis labels for font gaps

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2503a54
tour: pin matplotlib-only cases and render the describe curve

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deeb1f9
notes: 2026-09-11 final review findings and fix-wave plan

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09f56b2
fix(io): yahoo intraday bars keep their timestamps instead of midnight

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6ccc37b
fix(normalize): a fitted Normalizer reads 1-D data as one column

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501a2a3
fix(forecast): split marker+line fmt no longer shifts forecast/truth styles onto the wrong dataset

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d3b56ce
fix(truth): ndims=1 truth= must be one column of values per trace

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ec0700e
fix(plot): per-dataset {category: color} dict palettes colour marker-only hue plots

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806f99d
fix(autoinstall): no teardown traceback; a re-entered handle keeps call order

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2fc2a12
fix(1-D): a one-column trace's x is the row index in rows, on both backends

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e9d4f92
fix(animate): live forecasts on 2-column data follow the axes' dimensionality

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b019744
fix(forecast): a forecast_fmt marker is drawn at the forecast's steps only

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676bd15
docs(changelog): correct 1.1.0 claims found by the release-document review

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22ae49c
fix(io): a sniffed zip keeps the .npz trust error instead of a parquet one

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3ee54b8
fix(io): offline misses of guessed sources and unparseable cached copies

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3dac1ba
fix(align): Aligner classes read arrays; alignment warnings name the caller

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cb3fd17
fix(align): dispersion score raises when every dataset is constant

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8f64d47
notes: record hover-name report, docs findings, worktree-base lesson

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e84f9c7
fix(forecast): marker-only categorical regrouping always refuses to anchor forecasts

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36b5c2b
build: scikit-image floor 0.25.0, the first release with cp313 wheels

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314a236
release: fix checklist order and claims; gate a stale CHANGELOG date

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05f7aeb
fix(legend): legend_colors= list may name one colour per data entry beside overlays

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c59b3c6
fix(load): the TypeError lists polars frames, which load() accepts

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c205c57
fix(pipeline): rows a manip stage empties stop the pipeline there

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ca6c205
tour: apply figure-QA adjudication to cases and Inspect text

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63427ae
fix(plotly): markers only at true observations; hue markers honour alpha; Scatter3d keeps hue under mixed alpha

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0673f4b
fix(plot): composing into ax= continues the palette without repeating a colour; bundle and colorbar report the drawn colours

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f6f4afb
fix(plot): panels= splits a plain legend_colors list per panel

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4b1fd9e
fix(plot): two-column data draws into a 2-D ax= at the default ndims

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cb33e89
docs(release-notes): refresh the 1.1.0 draft from the reviewed CHANGELOG

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e876a55
fix(plot): per-dataset and nested labels= survive hue=/cluster= regrouping; nested label arrays/Series accepted on one axes

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46a1304
fix(colors): a 0-255 colour list raises instead of becoming a data palette

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c00b8cc
Merge W6: release checklist, notes, CHANGELOG corrections

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0d4f0ca
fix(plot): a reused pipeline's fitted cluster step colours the figure

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c33a1eb
fix(fonts): font='Noto Sans' resolves the bundled face in a fresh process

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7fe6b68
fix(plotly, dates): date axes are time-zone invariant; open-ended date xlim works

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49370f5
fix(matplotlib): an explicit marker= wins over the fmt marker, and markers on a smoothed line sit only at the samples

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6bf4222
fix(panels): forecast_trail= no longer refuses itself in the panel probe

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7ccaac7
fix(predict): forecast regular calendar data on its own calendar

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b8f01ee
fix(plotly): cell colorbar placement, kept cell titles, clear ax= dimensionality errors, caller traces untouched, ax= infers plotly

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8ff2d06
fix(matplotlib): continuous-hue markers carry alpha=

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b3342dd
fix(plotly): refuse 1-D animations like matplotlib; serial FrameContext.window_bounds report the comet head

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ab55c16
fix(transform): bare-array transform= is one dataset; a frame's index no longer NaNs the forecast

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0845512
fix(predict): reuse a fitted forecaster across index kinds again (1.0 regression)

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66ec8c4
fix(plot): the non-finite hue warning counts observations and names the caller

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f05b299
Merge W2: io/tools/_shared/colors/fonts review fixes

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70dc00b
fix(warnings): align/impute/manip/core warnings name the caller's line

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a014ae9
fix(predict): ARIMA's minimum history counts seasonal_order

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8ce518f
fix(matplotlib): observation-label connectors and box edges are drawn dark, as on plotly

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40c509c
test(predict): time-policy warnings are issued once, and only when they apply

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efed157
fix(truth): the 'truth' legend key is neutral gray when truths span several colours

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d656196
fix(matplotlib): titles and axis labels on caller axes and panels= cells use hypertools' font stack

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fde433f
fix(ndims=1): a shuffled time index is drawn in time order, joining its forecast

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8fd2f0d
docs: fix tutorial/example content findings from the 2026-09-11 review

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4a6b4f7
fix(plotly): honour frame_kwargs, keep zoom animation-only, anchor a positioned legend, document 3-D marker mapping

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cf68cca
fix(ndims=1): concise date ticks on matplotlib so labels never collide

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d4d81ea
fix(plot): a nested-list input's legend names its outer groups

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f2e7a35
docs(projectile_kalman): say what the forecast figures show

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d3f75ab
fix(matplotlib): marker= on a line fmt stays one artist, marked at the samples via markevery

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fd3948c
fix(surface): colour hull vertices from their nearest points; headless tests

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a422a97
Merge W5: tutorials/examples content fixes

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5c09e1b
Merge W1: predict calendar/reuse/seasonal/warning fixes

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46c7170
notes: merges W1/W2/W5/W6, surface-colour root cause, open design questions

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1e1abb4
fix(plot): the categorical line path lists its legend in category order

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32506e9
fix(plotly): name every hoverable data trace like its legend entry; keep animated legends complete

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fe2565f
test: account for transform= in the panel roster; the date axis uses the concise formatter

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97d3245
Merge W4a: forecast/truth/time-axis review fixes

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69c1ff7
fix(animate): keep every observation, move every morph frame, show callback titles

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bfbace3
fix(cluster): reject flat model kwargs in a cluster dict spec instead of dropping them

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d3fefd6
Merge fix/1.1-release-review (69c1ff7d) into the animation-core fixes

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07dd98d
fix(plot): an explicit legend=False wins over names=

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fa9a2a6
Merge branch 'fix/1.1-release-review' into worktree-agent-a551b1e7532902c98
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af8cbdf
Merge branch 'fix/1.1-release-review' into worktree-agent-a1cf9c0c41c2b7f27
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d2d74d9
Merge branch 'fix/1.1-release-review' into worktree-agent-aa4e8f5b24e5bb360
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a2e19ba
Merge W7: align/impute/manip fixes, pipeline cluster replay, warning attribution

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785dca5
fix(transform): polars frames work; datatype checks via the shared helpers

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2deac69
fix(plotly): tag animated data legend proxies hyp_legend_proxy, not the forecast-key tag

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9b39e38
Merge branch 'fix/1.1-release-review' into worktree-agent-a02d608da03be1c9a

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4428df9
Merge W10: flat cluster spec keys raise; legend=False wins over names=

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83b99d6
fix(matplotlib): keep label_alpha as the label box's own alpha

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2151cfe
fix(animate): keep line reveal timing on the refined grid; labels follow the drawn window

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5b14ca5
docs(plot): docstring for _palette_continuation's sample helper (GH #276 docstring gate)

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44bc2c4
notes: merge status, full-suite result, CHANGELOG drafts backup

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7f45de7
Merge W3 batch 1: plotly markers, hue alpha, hover names, cells, animation parity

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4d6dd7c
test(animate): state the chemtrails/hue-window/unequal-length audit checks in drawn-grid rows

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45c4424
fix(plotly): animated continuous hue travels with the data (3-D colour slices, 2-D colour-bin traces)

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ed67c60
fix(plot): record the palette colours and legend ranks on a plotly figure before it is shown; route label arrays through numpy

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6b81505
fix(plotly): 3-D data lines render at the requested width; animations default to the documented 1 pt

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ff1574e
fix(plotly): clip the 3-D density volume grid to the cube so its edges stay crisp

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472ca09
fix(plotly): Play/Pause controls sit below a visible x axis' tick labels and title

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bd23c09
docs(plotly): trail-trace bookkeeping comments name hyp_trail_index and colour-bin trails

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171e74a
Merge W4b: palettes, markers at samples, labels, legends, panels, ax= composition
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5755324
Merge fix/1.1-release-review (57553242) into the animation-core fixes

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f5ab128
fix(specs): reject flat model kwargs in every dispatcher's dict spec instead of dropping them

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61b59bd
Merge branch 'fix/1.1-release-review' into worktree-agent-aa9afcc4679e0cd04

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250c30b
test(animate): animated observation markers land exactly on the refined grid's observation vertices

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a047c20
test(plotly): hierarchy width test accounts for the 3-D GL width compensation

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acca7f1
Merge branch 'fix/1.1-release-review' into worktree-agent-a02d608da03be1c9a

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d33ca33
test(plotly): marker=/markers= on a line style marks only the observations

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afbb528
Merge W11: flat model-spec keys raise across dispatchers

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cc418fa
docs(plot): correct unit-scale limits, slow-notice timing and title messages

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4669ddb
docs(changelog): record the 2026-09-11 review fixes

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27d4686
Merge branch 'fix/1.1-release-review' into worktree-agent-a02d608da03be1c9a

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096f5a7
notes: merge status and verification pipeline

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457ab93
Merge W3 batch 2: plotly animated hue, 3-D line width, density clip, controls placement

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0ed1e8f
Merge W9: animation core (every observation a grid vertex, moving morphs, callback titles, companion colour, stream clamp)

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db01768
docs(changelog): animation-core and plotly animation review fixes

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b630802
fix(predict): time-policy warnings name the caller's line, once per plot call

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53c7673
Merge warning attribution fix for predict time policies

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25da7cc
fix(predict): print float steps without representation noise

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461d2e3
docs: re-execute all 25 tutorials and regenerate gallery thumbnails

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b1f857c
notes: Colab plotly-default lesson

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82951bf
notes: verification pipeline results

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e684d7c
tour: one interactive viewer, no IFrame warning (fresh-Colab check)

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e9db520
notes: Colab and CI status at e684d7cd

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794edd6
notes: final Colab and CI results

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f06f67f
notes: final CI result for the candidate

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63522a2

Commits on Sep 12, 2026

fix: start an animated forecast at the frame's drawn endpoint

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36c7a4b
fix: regenerate the animate_forecast gallery thumbnail with the others

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9f26b99
test: cover serial/window reveals and model comparisons for the forecast anchor

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9b881ee
notes: record the stale animated-forecast clips and the masked-exit-status trap

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0efe4d9
fix: anchor a regrouped animation's forecast on its drawn head too

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6f2cfd9
notes: record the regrouped-reveal gap and the probes that closed it

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e17ae0f
docs: regenerate the animated-forecast clips under the fixed anchor

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c433b8f