diff --git a/src/base/labels_nebius.config b/src/base/labels_nebius.config index c0a16df3a..aa192a5ee 100644 --- a/src/base/labels_nebius.config +++ b/src/base/labels_nebius.config @@ -52,7 +52,7 @@ process { disk = { 100.GB * task.attempt } } withLabel: highmem { - memory = { get_memory( 100.GB * task.attempt ) } + memory = { get_memory( 200.GB * task.attempt ) } disk = { 200.GB * task.attempt } pod = [[nodeSelector: 'nebius.com/node-group-id=mk8snodegroup-e00hnqhyfdcsy9m09n']] } diff --git a/src/data_processors/process_dataset/config.vsh.yaml b/src/data_processors/process_dataset/config.vsh.yaml index 9184a3f8c..67ecba505 100644 --- a/src/data_processors/process_dataset/config.vsh.yaml +++ b/src/data_processors/process_dataset/config.vsh.yaml @@ -35,4 +35,4 @@ runners: - type: executable - type: nextflow directives: - label: [lowcpu, midmem, hightime] + label: [lowcpu, highmem, hightime] diff --git a/src/datasets/loaders/allen_brain_cell_atlas_merfish/script.py b/src/datasets/loaders/allen_brain_cell_atlas_merfish/script.py index 28ebf44ba..1469e2c40 100644 --- a/src/datasets/loaders/allen_brain_cell_atlas_merfish/script.py +++ b/src/datasets/loaders/allen_brain_cell_atlas_merfish/script.py @@ -155,7 +155,7 @@ def download_fov_image(fov_idx, n_format, prefix, suffix, base_url, frames, stai reader = DaxReader(str(dax_path)) img = np.array([reader.load_frame(f) for f in frames]) reader.close() - tifffile.imsave(tif_path, img) + tifffile.imwrite(tif_path, img) return img