The current scanorama component outputs a feature matrix and and embedding. This makes the results confusing as it is a combination of the two that is being evaluated. Instead it should be split into two components, one which runs scanpy_correct() and returns a feature matrix and one which runs scanpy_integrate() and returns and embedding.
The current
scanoramacomponent outputs a feature matrix and and embedding. This makes the results confusing as it is a combination of the two that is being evaluated. Instead it should be split into two components, one which runsscanpy_correct()and returns a feature matrix and one which runsscanpy_integrate()and returns and embedding.