Issues

• Options for log y-axes

  lrgr/explosig#102 · Filter by author keller-mark opened on Feb 20, 2019

• Smoothed exposures line plot after sorting by survival

  lrgr/explosig#101 · Filter by author keller-mark opened on Feb 20, 2019

• Drag to reorder signatures, clinical variables, genes

  lrgr/explosig#100 · Filter by author keller-mark opened on Feb 20, 2019

• Continuous-valued clinical variables as small bar plots rather than track plots

  research
  lrgr/explosig#99 · Filter by author keller-mark opened on Feb 20, 2019

• Add hide button to "stratification" plots

  enhancement
  lrgr/explosig#98 · Filter by author keller-mark opened on Feb 20, 2019

• After clustering, correlate with various clinical and other data (genomic events, kataegis, germline events, drug response, HRDetect, ...)

  lrgr/explosig#97 · Filter by author keller-mark opened on Feb 20, 2019

• Checkboxes for whether or not to consider particular signatures when clustering

  lrgr/explosig#96 · Filter by author keller-mark opened on Feb 20, 2019

• Allow downloading of raw counts data in addition to processed data

  lrgr/explosig#94 · Filter by author keller-mark opened on Feb 20, 2019

• Inject "Other" tissue type into oncotree for datasets unable to be matched to a single code

  bug
  lrgr/explosig#92 · Filter by author keller-mark opened on Feb 18, 2019

• Figure out way to hierarchically group mutation classifications and pathologic stage values

  research
  lrgr/explosig#90 · Filter by author keller-mark opened on Feb 16, 2019
  2

• Individual Sample Exposure Panel Doesn't Update After New Signatures Are Added

  bug
  lrgr/explosig#86 · Filter by author wir963 opened on Feb 12, 2019
  2

• Plot: transcriptional strand bias

  enhancement
  lrgr/explosig#66 · Filter by author keller-mark opened on Jun 26, 2018

• Implement a "diff" mode for signatures

  enhancement
  lrgr/explosig#31 · Filter by author keller-mark opened on May 10, 2018

• Analysis of clonality/subclonality

  enhancement
  lrgr/explosig#29 · Filter by author keller-mark opened on May 9, 2018
  2

• Mutation prevalence by cancer type

  overview-modeplot
  lrgr/explosig#23 · Filter by author keller-mark opened on Apr 18, 2018