diff --git a/patches/@signalwire__docusaurus-plugin-llms-txt@1.2.2.patch b/patches/@signalwire__docusaurus-plugin-llms-txt@1.2.2.patch
new file mode 100644
index 000000000..64df84eac
--- /dev/null
+++ b/patches/@signalwire__docusaurus-plugin-llms-txt@1.2.2.patch
@@ -0,0 +1,37 @@
+diff --git a/lib/utils/url.js b/lib/utils/url.js
+index 0c3168c9128b6abd1a0860b222872b2332dc5ab8..303ac39b92e24c9008924c949ecf91c6746c38cc 100644
+--- a/lib/utils/url.js
++++ b/lib/utils/url.js
+@@ -56,19 +56,31 @@ export function stripBaseUrl(routePath, baseUrl) {
+  */
+ export function formatUrl(routePath, options, baseUrl = '') {
+     const { enableMarkdownFiles = true, relativePaths = true, markdownFile, } = options;
++    // routePath and markdownFile may already carry the Docusaurus baseUrl. Strip it, or the
++    // section prefix lands in the URL twice. Stripping before the .md suffix is what keeps a
++    // route that is the site root on the INDEX_MD branch instead of producing '/.md'.
++    const sitePath = relativePaths === false && baseUrl
++        ? (baseUrl.replace(/^[a-z][a-z0-9+.-]*:\/\/[^/]*/i, '') || '/')
++        : null;
+     // Ensure route path starts with /
+     let targetPath = ensureLeadingSlash(routePath);
++    if (sitePath) {
++        targetPath = stripBaseUrl(targetPath, sitePath);
++    }
+     // Use markdown file path if available and enabled
+     if (enableMarkdownFiles && markdownFile) {
+         // Ensure markdown file path starts with / for consistency
+         targetPath = ensureLeadingSlash(markdownFile);
++        if (sitePath) {
++            targetPath = stripBaseUrl(targetPath, sitePath);
++        }
+     }
+     else if (enableMarkdownFiles) {
+         // Add .md extension to route path
+         targetPath = targetPath === '/' ? INDEX_MD : `${targetPath}.md`;
+     }
+     // Handle absolute vs relative paths
+-    if (relativePaths === false && baseUrl) {
++    if (sitePath) {
+         return normalizeUrl([baseUrl, targetPath]);
+     }
+     // For relative paths, ensure we preserve the leading slash
diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml
index aa8dc3f64..2f1cc0766 100644
--- a/pnpm-lock.yaml
+++ b/pnpm-lock.yaml
@@ -203,6 +203,9 @@ settings:
   autoInstallPeers: true
   excludeLinksFromLockfile: false
 
+patchedDependencies:
+  '@signalwire/docusaurus-plugin-llms-txt@1.2.2': 7a2223d63ec437e823d7f72d8326cd8c35de63bdff98622db171192f9ad2f6ee
+
 importers:
 
   .:
@@ -447,7 +450,7 @@ importers:
         version: 3.10.2(@algolia/client-search@5.59.0)(@docusaurus/faster@3.10.2(@docusaurus/types@3.10.2(@swc/core@1.16.2)(esbuild@0.28.2)(postcss@8.5.28)(react-dom@19.3.0(react@19.3.0))(react@19.3.0))(esbuild@0.28.2)(postcss@8.5.28))(@mdx-js/react@3.1.1(@types/react@19.3.0)(react@19.3.0))(@rspack/core@1.7.12)(@swc/core@1.16.2)(@types/react@19.3.0)(esbuild@0.28.2)(postcss@8.5.28)(react-dom@19.3.0(react@19.3.0))(react@19.3.0)(search-insights@2.17.3)(typescript@7.0.2)
       '@signalwire/docusaurus-plugin-llms-txt':
         specifier: ^1.2.2
-        version: 1.2.2(@docusaurus/core@3.10.2(@docusaurus/faster@3.10.2(@docusaurus/types@3.10.2(@swc/core@1.16.2)(esbuild@0.28.2)(postcss@8.5.28)(react-dom@19.3.0(react@19.3.0))(react@19.3.0))(esbuild@0.28.2)(postcss@8.5.28))(@mdx-js/react@3.1.1(@types/react@19.3.0)(react@19.3.0))(@rspack/core@1.7.12)(@swc/core@1.16.2)(@swc/html@1.16.2)(csso@5.0.5)(esbuild@0.28.2)(lightningcss@1.33.0)(postcss@8.5.28)(react-dom@19.3.0(react@19.3.0))(react@19.3.0)(typescript@7.0.2)(uglify-js@3.19.3))
+        version: 1.2.2(patch_hash=7a2223d63ec437e823d7f72d8326cd8c35de63bdff98622db171192f9ad2f6ee)(@docusaurus/core@3.10.2(@docusaurus/faster@3.10.2(@docusaurus/types@3.10.2(@swc/core@1.16.2)(esbuild@0.28.2)(postcss@8.5.28)(react-dom@19.3.0(react@19.3.0))(react@19.3.0))(esbuild@0.28.2)(postcss@8.5.28))(@mdx-js/react@3.1.1(@types/react@19.3.0)(react@19.3.0))(@rspack/core@1.7.12)(@swc/core@1.16.2)(@swc/html@1.16.2)(csso@5.0.5)(esbuild@0.28.2)(lightningcss@1.33.0)(postcss@8.5.28)(react-dom@19.3.0(react@19.3.0))(react@19.3.0)(typescript@7.0.2)(uglify-js@3.19.3))
       clsx:
         specifier: ^2.1.1
         version: 2.1.1
@@ -13755,7 +13758,7 @@ snapshots:
 
   '@sideway/pinpoint@2.0.0': {}
 
-  '@signalwire/docusaurus-plugin-llms-txt@1.2.2(@docusaurus/core@3.10.2(@docusaurus/faster@3.10.2(@docusaurus/types@3.10.2(@swc/core@1.16.2)(esbuild@0.28.2)(postcss@8.5.28)(react-dom@19.3.0(react@19.3.0))(react@19.3.0))(esbuild@0.28.2)(postcss@8.5.28))(@mdx-js/react@3.1.1(@types/react@19.3.0)(react@19.3.0))(@rspack/core@1.7.12)(@swc/core@1.16.2)(@swc/html@1.16.2)(csso@5.0.5)(esbuild@0.28.2)(lightningcss@1.33.0)(postcss@8.5.28)(react-dom@19.3.0(react@19.3.0))(react@19.3.0)(typescript@7.0.2)(uglify-js@3.19.3))':
+  '@signalwire/docusaurus-plugin-llms-txt@1.2.2(patch_hash=7a2223d63ec437e823d7f72d8326cd8c35de63bdff98622db171192f9ad2f6ee)(@docusaurus/core@3.10.2(@docusaurus/faster@3.10.2(@docusaurus/types@3.10.2(@swc/core@1.16.2)(esbuild@0.28.2)(postcss@8.5.28)(react-dom@19.3.0(react@19.3.0))(react@19.3.0))(esbuild@0.28.2)(postcss@8.5.28))(@mdx-js/react@3.1.1(@types/react@19.3.0)(react@19.3.0))(@rspack/core@1.7.12)(@swc/core@1.16.2)(@swc/html@1.16.2)(csso@5.0.5)(esbuild@0.28.2)(lightningcss@1.33.0)(postcss@8.5.28)(react-dom@19.3.0(react@19.3.0))(react@19.3.0)(typescript@7.0.2)(uglify-js@3.19.3))':
     dependencies:
       '@docusaurus/core': 3.10.2(@docusaurus/faster@3.10.2(@docusaurus/types@3.10.2(@swc/core@1.16.2)(esbuild@0.28.2)(postcss@8.5.28)(react-dom@19.3.0(react@19.3.0))(react@19.3.0))(esbuild@0.28.2)(postcss@8.5.28))(@mdx-js/react@3.1.1(@types/react@19.3.0)(react@19.3.0))(@rspack/core@1.7.12)(@swc/core@1.16.2)(@swc/html@1.16.2)(csso@5.0.5)(esbuild@0.28.2)(lightningcss@1.33.0)(postcss@8.5.28)(react-dom@19.3.0(react@19.3.0))(react@19.3.0)(typescript@7.0.2)(uglify-js@3.19.3)
       fs-extra: 11.4.1
diff --git a/pnpm-workspace.yaml b/pnpm-workspace.yaml
index e69574e3a..833a917c1 100644
--- a/pnpm-workspace.yaml
+++ b/pnpm-workspace.yaml
@@ -41,3 +41,6 @@ supportedArchitectures:
 nodeLinker: hoisted
 publicHoistPattern:
   - "*"
+
+patchedDependencies:
+  '@signalwire/docusaurus-plugin-llms-txt@1.2.2': patches/@signalwire__docusaurus-plugin-llms-txt@1.2.2.patch
diff --git a/website/docusaurus.config.js b/website/docusaurus.config.js
index 333af4240..425149333 100644
--- a/website/docusaurus.config.js
+++ b/website/docusaurus.config.js
@@ -117,6 +117,9 @@ module.exports = {
 					includeGeneratedIndex: false,
 					includePages: true,
 					relativePaths: false,
+					excludeRoutes: [
+						'/cli/',
+					],
 				},
 			},
 		],