Issues

• Numpy version >2

  bug
  SystemsBioinformatics/cbmpy#64 · Filter by author MaaikeRemeijer opened on Oct 4, 2024
  

• Group information not updated when reactions are renamed

  SystemsBioinformatics/cbmpy#59 · Filter by author pranasag opened on Oct 27, 2023

• Reaction upper and lower bound aren't copied correctly when calling reaction.copy()

  SystemsBioinformatics/cbmpy#52 · Filter by author StevenWijnen opened on Jun 14, 2023

• Is documentation for 0.8 available?

  SystemsBioinformatics/cbmpy#42 · Filter by author jonrkarr opened on Sep 17, 2021 · Release 0.8.8

• What is the version requirement for swiglpk?

  SystemsBioinformatics/cbmpy#39 · Filter by author jonrkarr opened on Aug 17, 2021 · Release 0.8.8
  2

  

• Automate release to BioSimulators

  SystemsBioinformatics/cbmpy#34 · Filter by author jonrkarr opened on Jun 8, 2021

• setFluxBoundsFromDict can only update all reaction bounds.

  bugenhancement
  SystemsBioinformatics/cbmpy#26 · Filter by author JulLis opened on Nov 4, 2020 · Release 0.8.8
  2

  

• doFBAMinSum fails when a new reaction is added to a model

  bug
  SystemsBioinformatics/cbmpy#25 · Filter by author willigott opened on Jun 7, 2020 · Release 0.8.8
  1

  

• request multi rename function

  enhancement
  SystemsBioinformatics/cbmpy#24 · Filter by author JulLis opened on Mar 9, 2020
  1

  

• createGeneProteinAssociation can lead to duplicate gene labels

  bug
  SystemsBioinformatics/cbmpy#23 · Filter by author willigott opened on Oct 31, 2019 · Release 0.8.8
  1

  

• When reactions are deleted they are still part of groups and their IDs are still associated with genes.

  bugduplicate
  SystemsBioinformatics/cbmpy#22 · Filter by author willigott opened on Oct 31, 2019 · Release 0.8.8
  1

  

• Groups use references to objects

  enhancement
  SystemsBioinformatics/cbmpy#21 · Filter by author bgoli opened on Aug 11, 2019 · Release 0.8.8
  1

  

• refactor FluxBound

  enhancement
  SystemsBioinformatics/cbmpy#20 · Filter by author bgoli opened on Jun 17, 2019 · Release 0.8.8
  2

  

• Possible to add reactions with reagents whose corresponding species are not part of the model

  bug
  SystemsBioinformatics/cbmpy#19 · Filter by author willigott opened on Apr 9, 2019 · Release 0.8.8