Issues

• migrate off of numpy.distutils

  CovertLab/wcEcoli#1426 · Filter by author 1fish2 opened on Jan 12, 2024

• AnalysisParcaTask fizzling when running sims with COMPRESS_OUTPUT=1

  CovertLab/wcEcoli#1419 · Filter by author rjuenemann opened on Dec 13, 2023
  1

• Anerobic simulation timed out at 7 hours sim time

  CovertLab/wcEcoli#1417 · Filter by author 1fish2 opened on Dec 12, 2023

• Updating Jenkins version

  CovertLab/wcEcoli#1416 · Filter by author ggsun opened on Dec 11, 2023
  1

• Enforce integer sampling from multinomial

  CovertLab/wcEcoli#1399 · Filter by author thalassemia opened on Oct 28, 2023
  8

  

• Reading attributes from tables in cell_paths[0] fails if the cell wasn't simulated

  bug
  CovertLab/wcEcoli#1375 · Filter by author ggsun opened on Aug 21, 2023
  1

• Can wcEcoli be used to simulate other species?

  CovertLab/wcEcoli#1368 · Filter by author Rabadash8820 opened on May 25, 2023
  3

• Different metadata keys between sims run manually vs through Fireworks

  CovertLab/wcEcoli#1323 · Filter by author ggsun opened on Oct 27, 2022
  4

• Font not found for matplotlib

  CovertLab/wcEcoli#1274 · Filter by author tahorst opened on Mar 16, 2022

• Select AnalysisPaths options from the command line for analysis scripts

  enhancement
  CovertLab/wcEcoli#1221 · Filter by author tahorst opened on Nov 8, 2021
  1

• Cloud workflow does not work with some yaml args

  enhancement
  CovertLab/wcEcoli#1213 · Filter by author tahorst opened on Oct 29, 2021
  2

  

• filtered stats.pearsonr subroutine

  CovertLab/wcEcoli#1212 · Filter by author tahorst opened on Oct 28, 2021

• runParca --debug-parca raises KeyError: 'FNR-4FE-4S-CPLX__FNR-4FE-4S-CPLX__active'

  bug
  CovertLab/wcEcoli#1165 · Filter by author 1fish2 opened on Sep 2, 2021
  3

• Parca output differences between machines

  bugruntime environment
  CovertLab/wcEcoli#1154 · Filter by author tahorst opened on Aug 18, 2021
  2

• Reducing the data footprint for large simulations

  enhancement
  CovertLab/wcEcoli#1141 · Filter by author charliejharrison opened on Aug 6, 2021
  2

• Parca for operons

  enhancementmodeling
  CovertLab/wcEcoli#1123 · Filter by author 1fish2 opened on Jul 20, 2021
  3

  

• Illegal instruction on Sherlock

  CovertLab/wcEcoli#1107 · Filter by author tahorst opened on Jul 13, 2021

• anerobic nightly build fails in SimulationDaughterTask, also warnings

  bug
  CovertLab/wcEcoli#1084 · Filter by author 1fish2 opened on Jun 9, 2021
  4

• Very low oxygen usage in sims with new flat files

  CovertLab/wcEcoli#1077 · Filter by author tahorst opened on May 30, 2021
  2

• Complete file import pipeline from EcoCyc to WCM

  modeling
  CovertLab/wcEcoli#1067 · Filter by author ggsun opened on May 18, 2021

• Proposal: Releasing Versions of the Whole-Cell E. coli Model

  documentation
  CovertLab/wcEcoli#1061 · Filter by author U8NWXD opened on Mar 26, 2021
  1

• Parca for vivarium-ecoli [brainstorm thread]

  enhancement
  CovertLab/wcEcoli#1059 · Filter by author 1fish2 opened on Mar 23, 2021

• Removing directories of generations that initialized but terminated immediately

  CovertLab/wcEcoli#1044 · Filter by author bettybliu opened on Feb 17, 2021
  6

• accumulate, chart, and annotate daily simulation metrics

  testingtools
  CovertLab/wcEcoli#1032 · Filter by author 1fish2 opened on Feb 6, 2021

• ArcA activation in aerobic conditions

  bug
  CovertLab/wcEcoli#1020 · Filter by author tahorst opened on Jan 26, 2021